muscle3 (3.8.1551-3) unstable; urgency=medium

  * Team upload.
  * makefile.patch: mark forwarding not-needed.
  * 01_Fix_FTBFS_Hurd.patch: mark forwarding missing.
  * d/control: declare compliance to standards version 4.6.2.
  * d/s/lintian-overrides: remove now unused override.
  * d/clean: new: cleanup build artifacts. (Closes: #1048044)

 -- Étienne Mollier <emollier@debian.org>  Sun, 17 Dec 2023 15:04:37 +0100

muscle3 (3.8.1551-2) unstable; urgency=medium

  * Team upload.
  * Source-only upload.

 -- Étienne Mollier <emollier@debian.org>  Sat, 03 Dec 2022 21:11:07 +0100

muscle3 (3.8.1551-1) unstable; urgency=medium

  * Re-introduce muscle version 3 as a different program
    (see https://lists.debian.org/debian-med/2022/11/msg00080.html)
    Closes: #1024746
  * Epoch can be dropped since the package name was changed
  * Standards-Version: 4.6.1 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Use secure URI in Homepage field.
  * Fix day-of-week for changelog entry 3.52-1.
  * Rename binary and docs to muscle3
  * Lintian-override (see lintian bug #1017966)

 -- Andreas Tille <tille@debian.org>  Thu, 24 Nov 2022 09:44:25 +0100

muscle (1:3.8.1551-2) unstable; urgency=medium

  [ Helmut Grohne ]
  * Fix FTCBFS: Pass C++ compilers as GPP. (Closes: #922994)

  [ Andreas Tille ]
  * Delete outdated README.Debian
  * debhelper 12
  * Standards-Version: 4.3.0

 -- Andreas Tille <tille@debian.org>  Fri, 22 Feb 2019 22:13:23 +0100

muscle (1:3.8.1551-1) unstable; urgency=medium

  * New upstream version
  * Review watch file (no need to exclude files any more
  * Remove useless get-orig-source target
  * Source is now in main dir
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * Secure URI in copyright format
  * Remove trailing whitespace in debian/changelog

 -- Andreas Tille <tille@debian.org>  Mon, 29 Oct 2018 09:42:54 +0100

muscle (1:3.8.31+dfsg-3) unstable; urgency=medium

  * Team upload.
  * Fix FTCBFS: Do not hard code build architecture compiler g++.
    Thanks to Helmut Grohne for the patch.
    Closes: #871513
  * Bump Standards-Version.

 -- Sascha Steinbiss <satta@debian.org>  Tue, 08 Aug 2017 22:06:30 +0200

muscle (1:3.8.31+dfsg-2) unstable; urgency=low

  * Team upload
  [ Steffen Moeller and Hervé Ménager]
  * Introducing EDAM ontology annotation in
    debian/upstream/edam

  [ Canberk Koç ]
  * autopkgtest added
  * debian/example.fa added

  [ Andreas Tille ]
  * cme fix dpkg-control
  * hardening=+all

 -- Canberk Koç <canberkkoc@gmail.com>  Thu, 30 Jun 2016 04:31:26 +0300

muscle (1:3.8.31+dfsg-1) unstable; urgency=low

  [ Andreas Tille ]
  * debian/upstream/metadata: Added citations
  * debian/control:
     - Standards-Version: 3.9.3 (no changes needed)
     - debian/source/format: 3.0 (quilt)
  * Moved packaging from SVN to Git
  * cme fix dpkg-control
  * Mark repackaged orig.tar properly with +dfsg
  * debhelper 9
  * Remove information from README.Debian that became redundant
    by debian/upstream/metadata
  * Remove README.source since it is redundant by debian/control
    Files-Excluded

  [ Dylan Aïssi ]
  * debian/copyright: Fixed lintian dep5-copyright-license-name-not-unique

 -- Andreas Tille <tille@debian.org>  Mon, 18 Jan 2016 20:51:21 +0100

muscle (1:3.8.31-1) unstable; urgency=low

  [ Charles Plessy ]
  * New upstream release (Closes: #643443).
  * debian/control: Enhances: t-coffee.
  * Changed the doc-base section according to the new policy.
  * Updated my email address.
  * Updated debian/watch to new version scheme and download location.
  * Repack usptream archive and implemented a get-orig-source target
    (debian/rules, debian/README.source, debian/copyright).
  * Use Debhelper 8 (debian/control, debian/compat).
  * Build directly from debian/rules targets.
  * Corrected VCS URLs in debian/control.
  * Conforms to Debian Policy 3.9.2 (debian/control, no changes needed).

  [ David Paleino ]
  * removed myself from Uploaders (debian/control).

 -- Charles Plessy <plessy@debian.org>  Sun, 13 Nov 2011 18:38:06 +0900

muscle (3.70+fix1-2) unstable; urgency=low

  * debian/control Conflicts: and Replaces: muscle-doc (Closes: #465607)

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Thu, 14 Feb 2008 10:44:17 +0900

muscle (3.70+fix1-1) unstable; urgency=low

  [ Charles Plessy ]
  * New upstream version, buildable with GCC 4.3 (Closes: #462707)
    The version number was not increased upstream when the sources were
    changed. We name this new version in Debian "3.70+fix1".
  * Updated manual page.
  * Converted the source package to CDBS, dropped Makefile patch.
  * Fused muscle and muscle-doc.

  [ Nelson A. de Oliveira ]
  * Fixed watch file (Closes: #462827)

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Wed, 06 Feb 2008 12:04:31 +0900

muscle (3.70-1) unstable; urgency=low

  [ Charles Plessy ]
  * New upstream release (bugfixes plus undocumented new features).
  * debian/control:
    - Add Subversion repository.
    - Swiched to quilt.
    - Enhaces: seaview because SeaView can call muscle to re-align sequences.
    - Moved the Homepage: field out from the package's description.
    - Using debhelper 5.
    - Removed [Biology] from package description as there are Debtags now.
    - Checked that muscle conforms to Policy 3.7.3.
    - Updated Steffen's email address.
  * Handling nostrip build option (policy 10.1) (Closes: #437599).
  * Updated manpage.
  * debian/copyright made machine-readable.

  [ Nelson A. de Oliveira ]
  * Added watch file.

  [ David Paleino ]
  * debian/manpage.xml moved to debian/muscle.1.xml
  * debian/muscle.1 added - statically built
  * debian/manpages removed - passing arguments to dh_installman
    directly
  * debian/control:
    - B-D updated (see above)
    - added myself to Uploaders
    - moved XS-Vcs-* to Vcs-*
  * debian/rules:
    - manpages statically built
    - minor changes

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Sat, 12 Jan 2008 16:55:48 +0900

muscle (3.60-1) unstable; urgency=low

  * New upstram release (Closes: Bug#361742).
  * New maintainers email addresses.

 -- Charles Plessy <charles-debian-nospam@plessy.org>  Sat,  5 Aug 2006 09:57:27 +0900

muscle (3.52-2) unstable; urgency=low

  * Added missing build dependencies (Closes: Bug#287684).

 -- Steffen Moeller <moeller@pzr.uni-rostock.de>  Wed, 29 Dec 2004 21:50:47 +0200

muscle (3.52-1) unstable; urgency=low

  * New upstream version.
  * Fix build on arch other than Pentium (Closes: Bug#285000).

 -- Steffen Moeller <moeller@pzr.uni-rostock.de>  Sat, 18 Dec 2004 00:06:00 +0200

muscle (3.51-1) unstable; urgency=low

  * Initial Release (Closes: Bug#280411).

 -- Steffen Moeller <moeller@pzr.uni-rostock.de>  Sun, 19 Sep 2004 00:51:19 +0200
